In 1959, François Ellenberger, Paul Ellenberger, Jean Fabre and Leonard Ginsburg discovered the type specimen, a thighbone or femur and other assorted bones, south of the village of Thabana Morena. In 1962 these were addressed in a thesis by D. Costedoat.^[1] The exact location the bones were recovered, is today unknown.^[2]

In 1993, François-Xavier Gauffre assigned the remains to a second species of Melanorosaurus: Melanorosaurus thabanensis. The description was provisional, and in 1997 the fossil was described in more detail in a publication by Jacques van Heerden and Peter Malcolm Galton. The specific name refers to the site Thabana-Morena in Lesotho.^[3]

Gauffre assumed that the specimen had been found in the Upper Elliot Formation dating from the Hettangian-Sinemurian and thus was about twenty million year younger than Melanorosaurus readi.^[3] In 1996, he revised the date to the Lower Elliot Formation of the late Triassic in his non-published dissertation. He also referred the thighbone to a new genus and species Thotobolosaurus (now Kholumolumo^[4]). This remained a non-valid nomen ex dissertatione, as the name would never be published; furthermore the type material of this species does not coincide with that of M. thabanensis.^[5]

In 2016, M. thabanensis was appointed to the separate genus Meroktenos by Claire Peyre de Fabrègues and Ronan Allain. The genus name is a combination of ancient Greek μηρός, meros ("thigh") and κτῆνος, ktènos ("beast").^[2] The combinatio nova thus becomes Meroktenos thabanensis, the type species is the original Melanorosaurus thabanensis.

The holotype, MNHN.F.LES 16, consists of a right thighbone (MNHN.F.LES16c), a portion of the right ilium, with a piece of a vertebral neural arch (MNHN.F.LES16a); a left pubic bone (MNHN.F.LES16b); and a second right metatarsal (MNHN.F.LES16d) associated with the skeleton. In 2016, a new specimen, MNHN.F.LES351, was referred to the species; consisting of a cervical vertebra, a left ulna and a, probably left, radius. It might have belonged to the same individual as the holotype, but this cannot be strictly proven.^[2]

Meroktenos has a femur length of around forty-eight centimeters,^[2] suggesting a body length of about four meters.

In 2016, a revised list of distinguishing traits was given. The blade height of the ilium, measured from the highest point of the antitrochanter to the upper edge of the blade is 60% of the total height of the ilium, including peduncles. The rear blade of the ilium is roughly triangular in side view. The femur is very compact with a robusticity index, length divided by the circumference of the shaft, of 2.09. The femur has a straight shaft in both side and front views. The femoral shaft is substantially wider transversely than it is wide in side view, with a ratio of 1.58. On the rear of the femoral shaft, the fourth trochanter is oriented obliquely, running from the upper and inner side to the lower and outer side.^[2]

In 2016, Meroktenos was placed in the Sauropodomorpha, in a basal position. According to a cladistic analysis, Meroktenos formed a polytomy with Blikanasaurus and more derived taxa, above Aardonyx in the evolutionary tree and below a polytomy including Camelotia, Melanorosaurus and more derived groups:^[2]

A 2021 study by Pol and colleagues found Meroktenos to be a member of Lessemsauridae, being the sister taxon of a clade formed by Kholumolumo and Ledumahadi:^[6]

The relative transverse width of the femur, the eccentricity, is remarkably high for such a small animal. These proportions were known previously only from Sauropoda and explained as an adaptation to a very high absolute weight. Because the holotype probably was not a young animal and is unlikely to have attained giant proportions, the trait must have had a different function.^[2]

• 2016 in paleontology