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ResFinder 
Summary
ResFinder is a database that captures antimicrobial resistance genes from whole-genome data sets.[1] The database uses BLAST in order to accomplish this. The database allows inputs of full sequences, partial sequences, or short sequence reads from other sequencing platforms.[1] Additionally, users can set their own threshold for detection. By default it is at 100% ID. ResFinder pulls from other database such as the Marilyn Roberts database, the Lahey database (now defunct) and ARDB. Other sources include published literature including reviews.[2][3]
| Content | |
|---|---|
| Description | Database of Antimicrobial Resistance genes. |
| Data types captured | Antimicrobial Resistance |
| Organisms | Bacteria |
| Contact | |
| Primary citation | PMID 22782487 |
| Access | |
| Website | www |
| Miscellaneous | |
| Bookmarkable entities | yes |
See also edit
References edit
- ^ a b Zankari, E.; Hasman, H.; Cosentino, S.; Vestergaard, M.; Rasmussen, S.; Lund, O.; Aarestrup, F. M.; Larsen, M. V. (2012-11-01). "Identification of acquired antimicrobial resistance genes". Journal of Antimicrobial Chemotherapy. 67 (11): 2640–2644. doi:10.1093/jac/dks261. ISSN 0305-7453. PMC 3468078. PMID 22782487.
- ^ RATHER, P (1998). "Origins of the aminoglycoside modifying enzymes". Drug Resistance Updates. 1 (5): 285–291. doi:10.1016/s1368-7646(98)80044-7. ISSN 1368-7646. PMID 17092809.
- ^ van Hoek, Angela H. A. M.; Mevius, Dik; Guerra, Beatriz; Mullany, Peter; Roberts, Adam Paul; Aarts, Henk J. M. (2011). "Acquired Antibiotic Resistance Genes: An Overview". Frontiers in Microbiology. 2: 203. doi:10.3389/fmicb.2011.00203. ISSN 1664-302X. PMC 3202223. PMID 22046172.