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Sphingobacteria (phylum)

Summary

The FCB group is a superphylum of bacteria named after the main member phyla Fibrobacterota, Chlorobiota, and Bacteroidota. The members are considered to form a clade due to a number of conserved signature indels.[2]

Sphingobacteria
Bacteroides spp.
Scientific classification Edit this classification
Domain: Bacteria
Clade: FCB group
Phyla
Synonyms

Sphingobacteria Cavalier-Smith, 1987[1]

Cavalier-Smith calls the equivalent grouping a phylum by the name of Sphingobacteria. It contains the classes Chlorobiota, Fibrobacterota, Bacteroidota, and Flavobacteria. However, this megaclassification is not followed by the larger scientific community.[3][4][5]

FCB group[2][6][7] 16S rRNA based LTP_12_2021[8][9][10] GTDB 07-RS207 by Genome Taxonomy Database[11][12][13]
FCB

"Hydrogenedentes"

"Latescibacteria (incl. "Handelsmanbacteria")

"Edwardsbacteria""

"Zixibacteria"

"Eisenbacteria"

"Krumholzibacteriota" (incl. "Delphibacteria")

"Fermentibacteria" (incl. "Aegiribacteria")

Gemmatimonadota (incl. "Glassbacteria")

"Hydrothermota" (incl. "Stahlbacteria", "Pyropristinus")

"Cloacimonetes"

Fibrobacterota (incl. "Raymondbacteria")

"Delongbacteria"

An analogous situation is seen with the PVC group/Planctobacteria.

The Bacteroidota–Chlorobiota group in brown is visible on this 2016 tree of life using ribosomal protein sequences[14]

Notes edit

See also edit

References edit

  1. ^ Cavalier-Smith, T. (1987). The origin of cells: a symbiosis between genes, catalysts and membranes. Cold Spring Harbor Symposia on Quantitative Biology 52, 805-24, [1], [2].
  2. ^ a b Gupta, R. S. (2004). "The Phylogeny and Signature Sequences Characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes". Critical Reviews in Microbiology. 30 (2): 123–143. doi:10.1080/10408410490435133. PMID 15239383. S2CID 24565648.
  3. ^ Cavalier-Smith T (2006). "Rooting the tree of life by transition analyses". Biol. Direct. 1: 19. doi:10.1186/1745-6150-1-19. PMC 1586193. PMID 16834776.
  4. ^ Krieg, N.R.; Ludwig, W.; Whitman, W.B.; Hedlund, B.P.; Paster, B.J.; Staley, J.T.; Ward, N.; Brown, D.; Parte, A. (November 24, 2010) [1984(Williams & Wilkins)]. George M. Garrity (ed.). The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York: Springer. p. 908. ISBN 978-0-387-95042-6. British Library no. GBA561951.
  5. ^ Classification in LPSN; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332.
  6. ^ Emiley A Eloe-Fadrosh et al. 2017, Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature Communications 7 · January 2016 DOI: 10.1038/ncomms1047
  7. ^ Kirkegaard, Rasmus Hansen; Dueholm, Morten Simonsen; McIlroy, Simon Jon; Nierychlo, Marta; Karst, Søren Michael; Albertsen, Mads; Nielsen, Per Halkjær (October 2016). "Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters". The ISME Journal. 10 (10): 2352–2364. doi:10.1038/ismej.2016.43. ISSN 1751-7370. PMC 5030696. PMID 27058503.
  8. ^ "The LTP". Retrieved 23 February 2021.
  9. ^ "LTP_all tree in newick format". Retrieved 23 February 2021.
  10. ^ "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
  11. ^ "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
  12. ^ "ar53_r207.sp_label". Genome Taxonomy Database. Retrieved 20 June 2022.
  13. ^ "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.
  14. ^ Hug, Laura A.; Baker, Brett J.; Anantharaman, Karthik; Brown, Christopher T.; Probst, Alexander J.; Castelle, Cindy J.; Butterfield, Cristina N.; Hernsdorf, Alex W.; Amano, Yuki; Ise, Kotaro; Suzuki, Yohey; Dudek, Natasha; Relman, David A.; Finstad, Kari M.; Amundson, Ronald; Thomas, Brian C.; Banfield, Jillian F. (11 April 2016). "A new view of the tree of life". Nature Microbiology. 1 (5): 16048. doi:10.1038/nmicrobiol.2016.48. PMID 27572647.