Thermodesulfobacteriota Knowpia

Thermodesulfobacteriota
	Nitratidesulfovibrio vulgaris
Scientific classification
Domain:	Bacteria
Phylum:	Thermodesulfobacteriota; Garrity & Holt 2021
Classes
	"Anaeroferrophillalia" (sic) Murphy et al. 2021; Deferrisomatia Waite et al. 2020; Desulfarculia Waite et al. 2020; Desulfobaccia Waite et al. 2020; Desulfobacteria Waite et al. 2020; Desulfobulbia Waite et al. 2020; "Ca. Desulfofervidia" Waite et al. 2020; Desulfomonilia Waite et al. 2020; Desulfovibrionia Waite et al. 2020; Desulfuromonadia Waite et al. 2020; Dissulfuribacteria Waite et al. 2020; Syntrophia Waite et al. 2020; Syntrophobacteria Waite et al. 2020; Syntrophorhabdia Waite et al. 2020; Thermodesulfobacteria Hatchikian et al. 2002; "Zymogenia" Murphy et al. 2021;
Synonyms
	"Ca. Dadabacteria" Hug et al. 2016; "Desulfobacterota" Waite et al. 2020; "Thermodesulfobacteraeota" Oren et al. 2015; Thermodesulfobacteria Garrity and Holt 2002; "Thermodesulfobacteriota" Whitman et al. 2018;

The Thermodesulfobacteriota are a phylum^[3] of thermophilic^[4] sulfate-reducing bacteria.

A pathogenic intracellular thermodesulfobacteriote has recently been identified.^[5]

Phylogeny edit

The phylogeny is based on phylogenomic analysis:

120 single copy marker proteins based GTDB 08-RS214^[6]^[7]^[8]

Waite et al. 2020^[2]

Thermodesulfo

Deferrisomatia	Deferrisomatales

"Dadaibacteria"

Desulfuromonadia

	Geobacterales

	Desulfuromonadales

Desulfomonilia	Desulfomonilales

Syntrophia	Syntrophales

Syntrophorhabdia	Syntrophorhabdales

Dissulfuribacteria	Dissulfuribacterales

"Thermodesulfobacteriia"	Thermodesulfobacteriales

Desulfobulbia	Desulfobulbales

"Desulfofervidia"	"Desulfofervidales"

Desulfovibrionia	Desulfovibrionales

Syntrophobacteria	Syntrophobacterales

Desulfobaccia

Desulfobaccales

Desulfarculia

	"Adiutricales"

	Desulfarculales

Desulfobacteria

	Desulfatiglandales

	Desulfobacterales

‑bacteriota

16S rRNA based LTP_08_2023^[9]^[10]^[11]

Desulfobacterota G

Syntrophorhabdia	Syntrophorhabdales

Thermodesulfobacteriota	Thermodesulfobacteriales
"Thermodesulfobacteriia"

"Deferrisomatota"

Deferrisomatia	Deferrisomatales

"Bradymonadia"

Myxococcota

"Desulfuromonadota"

	Geobacterales

	Desulfuromonadales

Desulfuromonadia

Bdellovibrionota

Desulfobacterota

	Syntrophobacterales

	Desulfobulbales

	Desulfomonilales

	Desulfarculales

Syntrophales

	Desulfobaccales

	Desulfatiglandales

Desulfobacterales

Desulfobacteria

Desulfobacterota_A

Desulfovibrionia	Desulfovibrionales

Campylobacterota

	Chrysiogenota

	Deferribacterota

Pseudomonadota

"Deltaproteo

	"Lambdaproteobacteria" {SAR324}

	Bdellovibrionota

"Lernaellota" (FEN-1099)

"Binatota"

"Binatia"	"Binatales"

(Desulfobacterota B)

Myxococcota

"Deferrisomatota"

Deferrisomatia	Deferrisomatales

(Desulfobacterota C)

"Deferrimicrobiota"

"Deferrimicrobiia"	"Deferrimicrobiales"

"Anaeroferrophilia"	"Anaeroferrophilales"

(Desulfobacterota E)

	"Modulibacteria"

	"Methylomirabilota"

"Schekmanbacteria"

	"Tectomicrobia"

	Nitrospinota

Nitrospirota

"Desulfuromonadota"

Desulfuromonadia

	Geobacterales

	Desulfuromonadales

(Desulfobacterota F)

Thermodesulfo

"Zymogenia"	"Zymogenales"

Desulfomonilia	Desulfomonilales

Syntrophia	Syntrophales

	Dissulfuribacteria Dissulfuribacterales

	"Thermodesulfobacteriia" Thermodesulfobacteriales

Desulfobulbia	Desulfobulbales

"Desulfofervidia"	"Desulfofervidales"

Desulfovibrionia	Desulfovibrionales

Desulfobaccia

Desulfobaccales

Desulfarculia

	"Adiutricales"

	Desulfarculales

Syntrophobacteria	Syntrophobacterales

"Desulfatiglandia"	Desulfatiglandales

Desulfobacteria	Desulfobacterales

‑bacteriota

-bacteria"

"Aquificida"

Desulfobacterota G

Syntrophorhabdia	Syntrophorhabdales

"Acidulodesulfobacteriota"

"Acidulidesulfobacterales"
(SZUA-79)

"Acidulodesulfobacteriia"

"Dadaibacteriota"

"Dadabacteria"	"Nemesobacterales"

(Desulfobacterota D)

"Calescamantes"

"Thermosulfidibacterota"

	Chrysiogenota

	Deferribacterota

	Aquificota

	Campylobacterota

	"Leptospirillaeota"

	Pseudomonadota

References edit

^ Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi:10.1099/ijsem.0.005056. PMID 34694987.
^ ^a ^b ^c Waite DW, Chuvochina M, Pelikan C, Parks DH, Yilmaz P, Wagner M, Loy A, Naganuma T, Nakai R, Whitman WB, Hahn MW, Kuever J, Hugenholtz P. (2020). "Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities". Int J Syst Evol Microbiol. 70 (11): 5972–6016. doi:10.1099/ijsem.0.004213. PMID 33151140.
^ Vick TJ, Dodsworth JA, Costa KC, Shock EL, Hedlund BP (March 2010). "Microbiology and geochemistry of Little Hot Creek, a hot spring environment in the Long Valley Caldera". Geobiology. 8 (2): 140–54. Bibcode:2010Gbio....8..140V. doi:10.1111/j.1472-4669.2009.00228.x. PMID 20002204. S2CID 9610725.
^ Jeanthon C, L'Haridon S, Cueff V, Banta A, Reysenbach AL, Prieur D (May 2002). "Thermodesulfobacterium hydrogeniphilum sp. nov., a thermophilic, chemolithoautotrophic, sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent at Guaymas Basin, and emendation of the genus Thermodesulfobacterium". Int. J. Syst. Evol. Microbiol. 52 (Pt 3): 765–72. doi:10.1099/ijs.0.02025-0. PMID 12054236.
^ Schmitz-Esser S, Haferkamp I, Knab S, et al. (September 2008). "Lawsonia intracellularis contains a gene encoding a functional rickettsia-like ATP/ADP translocase for host exploitation". J. Bacteriol. 190 (17): 5746–52. doi:10.1128/JB.00391-08. PMC 2519521. PMID 18606736.
^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "The LTP". Retrieved 20 November 2023.
^ "LTP_all tree in newick format". Retrieved 20 November 2023.
^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.

[1] Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi:10.1099/ijsem.0.005056. PMID 34694987.

[Waite-2] Waite DW, Chuvochina M, Pelikan C, Parks DH, Yilmaz P, Wagner M, Loy A, Naganuma T, Nakai R, Whitman WB, Hahn MW, Kuever J, Hugenholtz P. (2020). "Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities". Int J Syst Evol Microbiol. 70 (11): 5972–6016. doi:10.1099/ijsem.0.004213. PMID 33151140.

[pmid20002204-3] Vick TJ, Dodsworth JA, Costa KC, Shock EL, Hedlund BP (March 2010). "Microbiology and geochemistry of Little Hot Creek, a hot spring environment in the Long Valley Caldera". Geobiology. 8 (2): 140–54. Bibcode:2010Gbio....8..140V. doi:10.1111/j.1472-4669.2009.00228.x. PMID 20002204. S2CID 9610725.

[pmid12054236-4] Jeanthon C, L'Haridon S, Cueff V, Banta A, Reysenbach AL, Prieur D (May 2002). "Thermodesulfobacterium hydrogeniphilum sp. nov., a thermophilic, chemolithoautotrophic, sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent at Guaymas Basin, and emendation of the genus Thermodesulfobacterium". Int. J. Syst. Evol. Microbiol. 52 (Pt 3): 765–72. doi:10.1099/ijs.0.02025-0. PMID 12054236.

[pmid18606736-5] Schmitz-Esser S, Haferkamp I, Knab S, et al. (September 2008). "Lawsonia intracellularis contains a gene encoding a functional rickettsia-like ATP/ADP translocase for host exploitation". J. Bacteriol. 190 (17): 5746–52. doi:10.1128/JB.00391-08. PMC 2519521. PMID 18606736.

[about-6] "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.

[tree-7] "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.

[taxon_history-8] "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

[LTP-9] "The LTP". Retrieved 20 November 2023.

[10] "LTP_all tree in newick format". Retrieved 20 November 2023.

[11] "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.

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Thermodesulfobacteriota

Nitratidesulfovibrio vulgaris
Scientific classification
Domain:	Bacteria
Phylum:	Thermodesulfobacteriota Garrity & Holt 2021^[1]
Classes^[2]
"Anaeroferrophillalia" (sic) Murphy et al. 2021 Deferrisomatia Waite et al. 2020 Desulfarculia Waite et al. 2020 Desulfobaccia Waite et al. 2020 Desulfobacteria Waite et al. 2020 Desulfobulbia Waite et al. 2020 "Ca. Desulfofervidia" Waite et al. 2020 Desulfomonilia Waite et al. 2020 Desulfovibrionia Waite et al. 2020 Desulfuromonadia Waite et al. 2020 Dissulfuribacteria Waite et al. 2020 Syntrophia Waite et al. 2020 Syntrophobacteria Waite et al. 2020 Syntrophorhabdia Waite et al. 2020 Thermodesulfobacteria Hatchikian et al. 2002 "Zymogenia" Murphy et al. 2021
Synonyms^[2]
"Ca. Dadabacteria" Hug et al. 2016 "Desulfobacterota" Waite et al. 2020 "Thermodesulfobacteraeota" Oren et al. 2015 Thermodesulfobacteria Garrity and Holt 2002 "Thermodesulfobacteriota" Whitman et al. 2018

Summary

Phylogeny edit

See also edit

References edit