UXS1 Knowpia

UXS1
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	2B69, 4GLL, 4LK3, 4M55
Identifiers
Aliases	UXS1, SDR6E1, UGD, UDP-glucuronate decarboxylase 1
External IDs	OMIM: 609749 MGI: 1915133 HomoloGene: 41609 GeneCards: UXS1
Gene location (Human)
Chr.	Chromosome 2 (human)
End	106,194,301 bp
Gene location (Mouse)
Chr.	Chromosome 1 (mouse)
End	43,827,800 bp
RNA expression pattern
	Top expressed in
	secondary oocyte; ; renal medulla; ; tibia; ; visceral pleura; ; germinal epithelium; ; spinal ganglia; ; trigeminal ganglion; ; stromal cell of endometrium; ; lower lobe of lung; ; monocyte;
	Top expressed in
	motor neuron; ; fossa; ; condyle; ; cumulus cell; ; secondary oocyte; ; conjunctival fornix; ; iris; ; substantia nigra; ; yolk sac; ; retinal pigment epithelium;
	More reference expression data
	More reference expression data
Gene ontology
Molecular function	protein homodimerization activity; carboxy-lyase activity; NAD+ binding; lyase activity; UDP-glucuronate decarboxylase activity;
Cellular component	integral component of membrane; Golgi cisterna membrane; Golgi apparatus; extracellular exosome; mitochondrion; membrane; cytoplasm;
Biological process	protein tetramerization; UDP-D-xylose biosynthetic process;
	Sources:Amigo / QuickGO
Orthologs
	80146
	67883
	ENSG00000115652
	ENSMUSG00000057363
	Q8NBZ7
	Q91XL3
NM_001253875; NM_001253876; NM_025076; NM_001377504; NM_001377505;
	NM_001377506; NM_001377507; NM_001377508; NM_001377509
	NM_026430
NP_001240804; NP_001240805; NP_079352; NP_001364433; NP_001364434;
	NP_001364435; NP_001364436; NP_001364437; NP_001364438
	NP_080706; NP_001355216; NP_001355217; NP_001355218
	Wikidata
View/Edit Human	View/Edit Mouse

UDP-glucuronic acid decarboxylase 1 is an enzyme that in humans is encoded by the UXS1 gene.^[5]^[6]

UDP-glucuronate decarboxylase (UGD; EC 4.1.1.35) catalyzes the formation of UDP-xylose from UDP-glucuronate. UDP-xylose is then used to initiate glycosaminoglycan biosynthesis on the core protein of proteoglycans.[supplied by OMIM]^[6]

References edit

^ ^a ^b ^c GRCh38: Ensembl release 89: ENSG00000115652 – Ensembl, May 2017
^ ^a ^b ^c GRCm38: Ensembl release 89: ENSMUSG00000057363 – Ensembl, May 2017
^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ Persson B, Kallberg Y, Bray JE, Bruford E, Dellaporta SL, Favia AD, Duarte RG, Jornvall H, Kavanagh KL, Kedishvili N, Kisiela M, Maser E, Mindnich R, Orchard S, Penning TM, Thornton JM, Adamski J, Oppermann U (Feb 2009). "The SDR (Short-Chain Dehydrogenase/Reductase and Related Enzymes) Nomenclature Initiative". Chem Biol Interact. 178 (1–3): 94–8. doi:10.1016/j.cbi.2008.10.040. PMC 2896744. PMID 19027726.
^ ^a ^b "Entrez Gene: UXS1 UDP-glucuronate decarboxylase 1".

Further reading edit

Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
Moriarity JL, Hurt KJ, Resnick AC, et al. (2002). "UDP-glucuronate decarboxylase, a key enzyme in proteoglycan synthesis: cloning, characterization, and localization". J. Biol. Chem. 277 (19): 16968–75. doi:10.1074/jbc.M109316200. PMID 11877387.
Hwang HY, Horvitz HR (2002). "The SQV-1 UDP-glucuronic acid decarboxylase and the SQV-7 nucleotide-sugar transporter may act in the Golgi apparatus to affect Caenorhabditis elegans vulval morphogenesis and embryonic development". Proc. Natl. Acad. Sci. U.S.A. 99 (22): 14218–23. Bibcode:2002PNAS...9914218H. doi:10.1073/pnas.172522199. PMC 137864. PMID 12391314.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Clark HF, Gurney AL, Abaya E, et al. (2003). "The Secreted Protein Discovery Initiative (SPDI), a Large-Scale Effort to Identify Novel Human Secreted and Transmembrane Proteins: A Bioinformatics Assessment". Genome Res. 13 (10): 2265–70. doi:10.1101/gr.1293003. PMC 403697. PMID 12975309.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
Hillier LW, Graves TA, Fulton RS, et al. (2005). "Generation and annotation of the DNA sequences of human chromosomes 2 and 4". Nature. 434 (7034): 724–31. Bibcode:2005Natur.434..724H. doi:10.1038/nature03466. PMID 15815621.
Otsuki T, Ota T, Nishikawa T, et al. (2007). "Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries". DNA Res. 12 (2): 117–26. doi:10.1093/dnares/12.2.117. PMID 16303743.

[refGRCh38Ensembl-1] GRCh38: Ensembl release 89: ENSG00000115652 – Ensembl, May 2017

[refGRCm38Ensembl-2] GRCm38: Ensembl release 89: ENSMUSG00000057363 – Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid19027726-5] Persson B, Kallberg Y, Bray JE, Bruford E, Dellaporta SL, Favia AD, Duarte RG, Jornvall H, Kavanagh KL, Kedishvili N, Kisiela M, Maser E, Mindnich R, Orchard S, Penning TM, Thornton JM, Adamski J, Oppermann U (Feb 2009). "The SDR (Short-Chain Dehydrogenase/Reductase and Related Enzymes) Nomenclature Initiative". Chem Biol Interact. 178 (1–3): 94–8. doi:10.1016/j.cbi.2008.10.040. PMC 2896744. PMID 19027726.

[entrez-6] "Entrez Gene: UXS1 UDP-glucuronate decarboxylase 1".

[5]

[6]

[1]

[2]

[3]

[4]

Summary

See also edit

References edit

Further reading edit